ght branch of the ACA is small or missing. The percentage of animals with a normal CoW is about 60%, which also applies to humans . Mongolian MedChemExpress Lysine vasopressin gerbils exhibit congenital malformations of the CoW, making them an ideal experimental model for cerebral ischemia research. Moreover, our previous research showed that variations in the CoW of gerbils are hereditary, and an inbred strain was developed to provide a genetically consistent animal model for exploring the molecular mechanisms contributing to variations in the CoW. We explored genes that might determine different phenotypes of the CoW at the expression level using suppression subtractive hybridization in the inbred strain of gerbils. SSH is used to study the expression levels of genes in different physiological states or different growth stages. This method greatly reduces the false-positive rate, has high sensitivity, high speed, and high efficiency, and its applications has helped to gradually expand knowledge on the genome of various species and the genes 
related to development and reproduction. In this study, we performed SSH to screen the genes associated with variations in the CoW in F10 inbred gerbils. Results Construction of SSH libraries by various types of the CoW We developed SSH libraries using 9 brain samples from F10 inbred gerbils classified into 4 groups and 12 sub-groups based on the CoW type. In Group 1, subgroup 1.1 was constructed using the Type B-I sample as the tester and the Type B-II sample as the driver, while subgroup 1.2 was constructed using the Type B-II sample as the tester and the Type B-I sample as the driver. In Group 2, subgroup 2.1 was constructed using the Type B-III sample as the tester and the Type B-I sample as the driver, while subgroup 2.2 was constructed 2 / 14 Selection of Genes Associated with Variations in CoW in Gerbils by SSH using the Type B-I sample as the tester and the Type B-III sample as the driver. In Group 3, subgroup 3.1 was constructed using the Type B-I sample as the tester and the Type B-IV sample as the driver, while subgroup 3.2 was constructed was constructed using the Type B-IV sample as the tester and the Type B-I sample as the driver. In Group 4, subgroup 4.1 was constructed using the Type A-I sample as the tester and the Type A-IV sample as the driver, while subgroup 4.2 was constructed using the Type A-IV sample as the tester and the Type A-I sample as the driver. Subgroup 4.3 was PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/19668191 constructed using the Type A-I sample as the tester and the Type B-I sample as the driver, while subgroup 4.4 was constructed using the Type B-I sample as the tester and the Type A-I sample as the driver. Subgroup 4.5 was constructed using the Type A-IV sample as the tester and the Type B-I sample as the driver, while subgroup 4.6 was constructed using the Type B-I sample as the tester and the Type A-IV sample as the driver. Because SSH PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/19665930 can make the differential expression genes being enriched while other genes being hybridized, -actin, as a housekeeping gene, should exist low expression level in the PCR product after subtracted. Besides, the genes after subtracted should have less cDNA fragments in tester and it can be tested by Southern blotting. Therefore, the efficiency of SSH method was 3 / 14 Selection of Genes Associated with Variations in CoW in Gerbils by SSH Fig 1. The efficiency of suppression subtractive hybridization evaluated by qPCR and Southern blotting. The efficiency was evaluated by qPCR with -actin primers. The efficiency w
